"Never Waste A Good Crisis"

  • Thursday, April 30, 2009 - 21:58

    morrisp

    So - the group here at CM.org is heading to the 109th General Meeting of the American Society for Microbiology in a few weeks, and Chris is making buttons for us to take to the meeting so that we can promote the site (aka trade for beers).  No, seriously - take a look at the 'Data Location Map' - we're beginning to populate the site.  Slow but sure!  CM.org guru, Matthew Cook, is working on the table that will allow folks to search the site based on specific parameters, such as location, depth, coral species, etc.  Everybody is busy around here - but we're getting there!       

     

    (Update, 5 May 2009:  CM.org guru, Matthew Cook, feels that an image of his face getting slugged would be a more attractive button image than the ever-so-lovely image of Acropora palmata - I am hesitant to disagree, since we need to keep our CM.org guru happy - but right now he is so unhappy with JavaScript that I'm not sure this would matter much to him.)

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  • Sunday, April 12, 2009 - 18:04

    ckellogg

     

    Pocillopora meandrina, aka Cauliflower coral; image courtesy of the National Park of American Samoa, and found here.


    To date, all studies that have investigated coral-microbial (bacterial and archaeal) interactions have looked at adults.  But inquiring minds want to know...when (and how) does this non-random association occur?  Is it a vertical (parent to child) or horizontal (selectively taken up from the surrounding water) process?  Amy Apprill, who is clearly a masochist hardworking graduate student, collected oocyte bundles, freshly spawned eggs, and planulae from Pocillopora  meandrina and employed a variety of molecular techniques to get at this question.  P. meandrina is already known to package zooxanthellae into it's eggs and sperm, so it's as good a lab rat as any to look for vertical transmission of other microbes.  However, as you will see from the abstract below, bacteria were not detected inside tissue until the coral babies were planulae, making a case for horizontal rather than vertical transmission:

    Associations between healthy adult reef-building corals and bacteria and archaea have been observed in many coral species, but the initiation of their association is not understood. We investigated the onset of association between microorganisms and Pocillopora meandrina, a coral that vertically seeds its eggs with symbiotic dinoflagellates before spawning. We compared the bacterial communities associated with prespawned oocyte bundles, spawned eggs, and week old planulae using multivariate analyses of terminal restriction fragment length polymorphisms of SSU rRNA genes, which revealed that the composition of bacteria differed between these life stages. Additionally, planulae raised in ambient seawater and seawater filtered to reduce the microbial cell density harbored dissimilar bacterial communities, though SSU rRNA gene clone libraries showed that planulae raised in both treatments were primarily associated with different members of the Roseobacter clade of Alphaproteobacteria. Fluorescent in situ hybridization with an oligonucleotide probe suite targeting all bacteria and one oligonucleotide probe targeting members of the Roseobacter clade was used to localize the bacterial cells. Only planulae greater than 3 days old were observed to contain internalized bacterial cells, and members of the Roseobacter clade were detected in high abundance within planula tissues exposed to the ambient seawater treatment. We conclude that the onset of association between microorganisms and the coral P. meandrina appears to occur through horizontal uptake by planulae older than 79 h, and that uptake is preferential to members of the Roseobacter clade and potentially sensitive to the ambient seawater microbial community.

    Apprill, A., H.Q. Marlow, M.Q. Martindale, and M.S. Rappe (2009). The onset of microbial associations in the coral Pocillopora meandrina.  The ISME Journal, doi: 10.1038/ismej.2009.3

     

     

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  • Friday, April 10, 2009 - 11:01

    ckellogg

    Acropora valida, image found here, at www.ultimatereef.net

    Ever since Forest Rohwer's 2002 paper, we (the coral micro community) have been running around waving our hands and claiming that corals have species-specific communities that are conserved over large geographic distances.  I know I've done it and I'm certainly not alone.  However, as a new paper from David Bourne's lab points out, the Rohwer paper was looking at conserved bacterial communities at the family level (i.e., Montastraea vs. Diploria).  If we want to be able to say what we've been saying, we really ought to be more specific, that is, compare the bacterial communities of several species within a genus.

    And that is just what this paper by Raechel Littman et al. does, using 16S clone libraries AND DGGE patterns, AND T-RFLP patterns (they're hard core in Australia!)  Not only does it seem that bacterial communities are conserved at the genus level rather than the species level, but there were differences between sampling sites 40 km apart.   The Great Barrier Reef, multiple methods, evidence for microbial biogeography – you know you want to read this paper.  To start you off, here is the abstract:

    Patterns in the diversity of bacterial communities associated with three species of Acropora (Acropora millepora, Acropora tenuis and Acropora valida) were compared at two locations (Magnetic Island and Orpheus Island) on the Great Barrier Reef to better understand the nature and specificity of coral–microbial symbioses. Three culture-independent techniques demonstrated consistent bacterial communities among replicate samples of each coral species, confirming that corals associate with specific microbiota. Profiles were also conserved among all three species of Acropora within each location, suggesting that closely related corals of the same genus harbor similar bacterial types. Bacterial community profiles of A. millepora at Orpheus Island were consistent in samples collected throughout the year, indicating a stable community despite temporal changes. However, DGGE and T-RFLP profiles differed on corals from different reefs. Nonmetric multidimensional scaling of T-RFLP profiles showed that samples grouped according to location rather than coral species. Although similar sequences were retrieved from clone libraries of corals at both Magnetic and Orpheus Island, differences in the relative dominant bacterial ribotypes within the libraries drive bacterial community structure at different geographical locations. These results indicate certain bacterial groups associated specifically with corals, but the dominant bacterial genera differ between geographically-spaced corals.

    Littman, R.A., B.L. Willis, C. Pfeffer and D.G. Bourne (2009)
    Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef.  FEMS Microbiology Ecology 68:152-163
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  • Wednesday, April 8, 2009 - 22:44

    morrisp

    Lophelia pertusa, image credit:  http://www.ipsl.jussieu.fr/~jomce/acidification/

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    This week I received an email from Christina Kellogg (USGS) that was addressed to 'Deep-coral people (and shallow-water friends)' about her recently published manuscript titled 'Culture-Independent Characterization of Bacterial Communities Associated with the Cold-Water Coral Lophelia pertusa in the Northeastern Gulf of Mexico'.   

    Chris is a friend of CoralMicrobes.org - and is contributing to this blog, for which I am (as one of her shallow colleagues) quite grateful!  So regardless of your personal depth (or temperature preference), go and take a look at her article.  To get you started, here is the abstract:   

    Bacteria are recognized as an important part of the total biology of shallow-water corals. Studies of shallow-water corals suggest that associated bacteria may benefit the corals by cycling carbon, fixing nitrogen, chelating iron, and producing antibiotics that protect the coral from other microbes. Cold-water or deep-sea corals have a fundamentally different ecology due to their adaptation to cold, dark, high-pressure environments and as such have novel microbiota. The goal of this study was to characterize the microbial associates of Lophelia pertusa in the northeastern Gulf of Mexico. This is the first study to collect the coral samples in individual insulated containers and to preserve coral samples at depth in an effort to minimize thermal shock and evaluate the effects of environmental gradients on the microbial diversity of samples. Molecular analysis of bacterial diversity showed a marked difference between the two study sites, Viosca Knoll 906/862 (VK906/862) and Viosca Knoll 826 (VK826). The bacterial communities from VK826 were dominated by a variety of unknown mycoplasmal members of the Tenericutes and Bacteroidetes, whereas the libraries from VK906/862 were dominated by members of the Proteobacteria. In addition to novel sequences, the 16S rRNA gene clone libraries revealed many bacterial sequences in common between Gulf of Mexico Lophelia corals and Norwegian fjord Lophelia corals, as well as shallow-water corals.  Two Lophelia-specific bacterial groups were identified: a cluster of gammaproteobacteria related to sulfide-oxidizing gill symbionts of seep clams and a group of Mycoplasma spp.  The presence of these groups in both Gulf and Norwegian Lophelia corals indicates that in spite of the geographic heterogeneity observed in Lophelia-associated bacterial communities, there are Lophelia-specific microbes.

    I find the 'unknown mycoplasmal members' of these communities really interesting.

    You can find the article here:

    Kellogg, C.A., J.T. Lisle, and J.P. Galkiewicz.  2009.  Culture-independent characterization of bacterial communities associated with the cold-water coral Lophelia pertusa in the northeastern Gulf of Mexico.  Applied and Environmental Microbiology  75(8):2294-2303. 

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  • Monday, April 6, 2009 - 12:50

    macook

    It seems like ocean acidification is a hot topic these days...so if you want to read more about this topic, you might want to head over to the Ocean-Acidification Network or the European Project on Ocean Acidification (EPOCA)... 

    ...or watch this excellent production (funded by EPOCA) by students in the Ridgeway School in Plymouth, UK - first seen over at Climate Shifts ...

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